J3_4V8Y_040
3D structure
- PDB id
- 4V8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of the 80S-eIF5B-Met-itRNAMet Eukaryotic Translation Initiation Complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- UAGAUG*CAUAGCAGG*CGAAUUGCAAUGUCA
- Length
- 30 nucleotides
- Bulged bases
- 4V8Y|1|B5|A|3172, 4V8Y|1|B5|G|3173, 4V8Y|1|B5|A|3215, 4V8Y|1|B5|G|3216, 4V8Y|1|B5|G|3219, 4V8Y|1|B5|A|3268, 4V8Y|1|B5|U|3270, 4V8Y|1|B5|C|3272, 4V8Y|1|B5|U|3275, 4V8Y|1|B5|G|3276, 4V8Y|1|B5|C|3278
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V8Y_040 not in the Motif Atlas
- Homologous match to J3_8P9A_064
- Geometric discrepancy: 0.3741
- The information below is about J3_8P9A_064
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_03190.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-F-F-F-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
4V8Y|1|B5|U|3171
4V8Y|1|B5|A|3172
4V8Y|1|B5|G|3173
4V8Y|1|B5|A|3174
4V8Y|1|B5|U|3175
4V8Y|1|B5|G|3176
*
4V8Y|1|B5|C|3212
4V8Y|1|B5|A|3213
4V8Y|1|B5|U|3214
4V8Y|1|B5|A|3215
4V8Y|1|B5|G|3216
4V8Y|1|B5|C|3217
4V8Y|1|B5|A|3218
4V8Y|1|B5|G|3219
4V8Y|1|B5|G|3220
*
4V8Y|1|B5|C|3265
4V8Y|1|B5|G|3266
4V8Y|1|B5|A|3267
4V8Y|1|B5|A|3268
4V8Y|1|B5|U|3269
4V8Y|1|B5|U|3270
4V8Y|1|B5|G|3271
4V8Y|1|B5|C|3272
4V8Y|1|B5|A|3273
4V8Y|1|B5|A|3274
4V8Y|1|B5|U|3275
4V8Y|1|B5|G|3276
4V8Y|1|B5|U|3277
4V8Y|1|B5|C|3278
4V8Y|1|B5|A|3279
Current chains
- Chain B5
- 25S RIBOSOMAL RNA
Nearby chains
- Chain BE
- 60S RIBOSOMAL PROTEIN L6-A
- Chain BM
- 60S RIBOSOMAL PROTEIN L14-B
- Chain BO
- 60S RIBOSOMAL PROTEIN L16-A
- Chain Bf
- 60S RIBOSOMAL PROTEIN L33-A
Coloring options: