J3_4V90_010

3D structure

PDB id

4V90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V90_010 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0584

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4V90|1|BA|C|698
4V90|1|BA|A|699
4V90|1|BA|G|700
*
4V90|1|BA|C|732
4V90|1|BA|G|733
4V90|1|BA|A|734
4V90|1|BA|A|735
4V90|1|BA|C|736
*
4V90|1|BA|G|760
4V90|1|BA|A|761
4V90|1|BA|U|762
4V90|1|BA|G|763

Current chains

Chain BA

23S RIBOSOMAL RNA

Nearby chains

Chain BD

50S RIBOSOMAL PROTEIN L2