J3_4V90_017

3D structure

PDB id

4V90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GC*GGAAUCU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V90_017 not in the Motif Atlas

Geometric match to J3_4LFB_010

Geometric discrepancy: 0.122

The information below is about J3_4LFB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.4

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

4V90|1|AA|G|46
4V90|1|AA|C|47
*
4V90|1|AA|G|361
4V90|1|AA|G|362
4V90|1|AA|A|363
4V90|1|AA|A|364
4V90|1|AA|U|365
4V90|1|AA|C|366
4V90|1|AA|U|367
*
4V90|1|AA|A|393
4V90|1|AA|G|394
4V90|1|AA|C|395

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain AP

30S RIBOSOMAL PROTEIN S16

Chain AY

ELONGATION FACTOR G