J3_4V90_019

3D structure

PDB id

4V90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus Ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CGG*CUAG*CG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V90_019 not in the Motif Atlas

Geometric match to J3_6CZR_016

Geometric discrepancy: 0.1388

The information below is about J3_6CZR_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.4

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

4V90|1|AA|C|586
4V90|1|AA|G|587
4V90|1|AA|G|588
*
4V90|1|AA|C|651
4V90|1|AA|U|652
4V90|1|AA|A|653
4V90|1|AA|G|654
*
4V90|1|AA|C|754
4V90|1|AA|G|755

Current chains

Chain AA

16S RIBOSOMAL RNA

Nearby chains

Chain AH

30S RIBOSOMAL PROTEIN S8

Chain AL

30S RIBOSOMAL PROTEIN S12

Chain AO

30S RIBOSOMAL PROTEIN S15

Chain AQ

30S RIBOSOMAL PROTEIN S17