J3_4V92_001

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAUUAC*GUAGU

Length

25 nucleotides

Bulged bases

4V92|1|A2|A|47, 4V92|1|A2|U|440

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V92|1|A2|A|41
4V92|1|A2|G|42
4V92|1|A2|A|43
4V92|1|A2|U|44
4V92|1|A2|U|45
4V92|1|A2|A|46
4V92|1|A2|A|47
4V92|1|A2|G|48
*
4V92|1|A2|C|431
4V92|1|A2|G|432
4V92|1|A2|C|433
4V92|1|A2|G|434
4V92|1|A2|C|435
4V92|1|A2|A|436
4V92|1|A2|A|437
4V92|1|A2|A|438
4V92|1|A2|U|439
4V92|1|A2|U|440
4V92|1|A2|A|441
4V92|1|A2|C|442
*
4V92|1|A2|G|462
4V92|1|A2|U|463
4V92|1|A2|A|464
4V92|1|A2|G|465
4V92|1|A2|U|466

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BX

US12

Chain BY

ES24