J3_4V92_003

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AUCA*UAACUACUG*CAUUU

Length

18 nucleotides

Bulged bases

4V92|1|A2|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V92_003 not in the Motif Atlas

Homologous match to J3_4V88_033

Geometric discrepancy: 0.1244

The information below is about J3_4V88_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_38616.1

Basepair signature

cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW

Number of instances in this motif group

1

Unit IDs

4V92|1|A2|A|881
4V92|1|A2|U|882
4V92|1|A2|C|883
4V92|1|A2|A|884
*
4V92|1|A2|U|928
4V92|1|A2|A|929
4V92|1|A2|A|930
4V92|1|A2|C|931
4V92|1|A2|U|932
4V92|1|A2|A|933
4V92|1|A2|C|934
4V92|1|A2|U|935
4V92|1|A2|G|936
*
4V92|1|A2|C|943
4V92|1|A2|A|944
4V92|1|A2|U|945
4V92|1|A2|U|946
4V92|1|A2|U|947

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BB

ES1

Chain BN

US15

Chain Ba

ES26