J3_4V92_022

3D structure

PDB id

4V92 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AGGUCCAGAC*GGGUG*UUAGACGUUCU

Length

26 nucleotides

Bulged bases

4V92|1|A2|A|1217, 4V92|1|A2|G|1445, 4V92|1|A2|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V92|1|A2|A|1211
4V92|1|A2|G|1212
4V92|1|A2|G|1213
4V92|1|A2|U|1214
4V92|1|A2|C|1215
4V92|1|A2|C|1216
4V92|1|A2|A|1217
4V92|1|A2|G|1218
4V92|1|A2|A|1219
4V92|1|A2|C|1220
*
4V92|1|A2|G|1263
4V92|1|A2|G|1264
4V92|1|A2|G|1265
4V92|1|A2|U|1266
4V92|1|A2|G|1267
*
4V92|1|A2|U|1442
4V92|1|A2|U|1443
4V92|1|A2|A|1444
4V92|1|A2|G|1445
4V92|1|A2|A|1446
4V92|1|A2|C|1447
4V92|1|A2|G|1448
4V92|1|A2|U|1449
4V92|1|A2|U|1450
4V92|1|A2|C|1451
4V92|1|A2|U|1452

Current chains

Chain A2

18S RRNA

Nearby chains

Chain BK

ES10

Chain BP

US19

Chain Bd

US14

Chain Bf

ES31