J3_4V95_053

3D structure

PDB id

4V95 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of YAEJ bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

4V95|1|CA|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V95_053 not in the Motif Atlas

Homologous match to J3_4LFB_002

Geometric discrepancy: 0.1471

The information below is about J3_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85722.1

Basepair signature

cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW

Number of instances in this motif group

5

Unit IDs

4V95|1|CA|C|936
4V95|1|CA|A|937
4V95|1|CA|A|938
4V95|1|CA|G|939
*
4V95|1|CA|C|1344
4V95|1|CA|U|1345
4V95|1|CA|A|1346
4V95|1|CA|G|1347
4V95|1|CA|U|1348
4V95|1|CA|A|1349
4V95|1|CA|A|1350
*
4V95|1|CA|U|1372
4V95|1|CA|G|1373
4V95|1|CA|A|1374
4V95|1|CA|A|1375
4V95|1|CA|U|1376
4V95|1|CA|A|1377
4V95|1|CA|C|1378
4V95|1|CA|G|1379

Current chains

Chain CA

16S Ribosomal RNA

Nearby chains

Chain CG

30S Ribosomal Protein S7

Chain CI

30S Ribosomal Protein S9