J3_4V97_023

3D structure

PDB id

4V97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G299A.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4V97|1|DA|G|686, 4V97|1|DA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V97_023 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.0954

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V97|1|DA|C|683
4V97|1|DA|G|684
4V97|1|DA|A|685
4V97|1|DA|G|686
4V97|1|DA|C|687
4V97|1|DA|U|688
4V97|1|DA|A|689
*
4V97|1|DA|U|773
4V97|1|DA|A|774
4V97|1|DA|G|775
*
4V97|1|DA|C|791
4V97|1|DA|G|792
4V97|1|DA|A|793
4V97|1|DA|G|794

Current chains

Chain DA

23S rRNA

Nearby chains

Chain D7

50S RIBOSOMAL PROTEIN L34

Chain DD

50S RIBOSOMAL PROTEIN L2