J3_4V9B_015

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUC*GAGC*GUAGAAG

Length

14 nucleotides

Bulged bases

4V9B|1|BA|G|2334

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9B|1|BA|C|2295
4V9B|1|BA|U|2296
4V9B|1|BA|C|2297
*
4V9B|1|BA|G|2321
4V9B|1|BA|A|2322
4V9B|1|BA|G|2323
4V9B|1|BA|C|2324
*
4V9B|1|BA|G|2331
4V9B|1|BA|U|2332
4V9B|1|BA|A|2333
4V9B|1|BA|G|2334
4V9B|1|BA|A|2335
4V9B|1|BA|A|2336
4V9B|1|BA|G|2337

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AC

Transfer RNA; tRNA

Chain B3

50S ribosomal protein L27

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BG

50S ribosomal protein L5

Chain BQ

50S ribosomal protein L18