J3_4V9B_028

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGAGCUA*UAG*CGAG

Length

14 nucleotides

Bulged bases

4V9B|1|DA|G|686, 4V9B|1|DA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9B_028 not in the Motif Atlas

Homologous match to J3_7A0S_004

Geometric discrepancy: 0.0867

The information below is about J3_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46658.1

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

10

Unit IDs

4V9B|1|DA|C|683
4V9B|1|DA|G|684
4V9B|1|DA|A|685
4V9B|1|DA|G|686
4V9B|1|DA|C|687
4V9B|1|DA|U|688
4V9B|1|DA|A|689
*
4V9B|1|DA|U|773
4V9B|1|DA|A|774
4V9B|1|DA|G|775
*
4V9B|1|DA|C|791
4V9B|1|DA|G|792
4V9B|1|DA|A|793
4V9B|1|DA|G|794

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D7

50S ribosomal protein L34

Chain DD

50S ribosomal protein L2