J3_4V9D_019

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

4V9D|1|CA|U|686, 4V9D|1|CA|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9D_019 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0714

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V9D|1|CA|U|683
4V9D|1|CA|G|684
4V9D|1|CA|A|685
4V9D|1|CA|U|686
4V9D|1|CA|C|687
4V9D|1|CA|U|688
4V9D|1|CA|A|689
*
4V9D|1|CA|U|773
4V9D|1|CA|G|774
4V9D|1|CA|G|775
*
4V9D|1|CA|C|791
4V9D|1|CA|A|792
4V9D|1|CA|A|793
4V9D|1|CA|A|794

Current chains

Chain CA

23S rRNA

Nearby chains

Chain C2

50S ribosomal protein L34

Chain CC

50S ribosomal protein L2