J3_4V9D_054

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCACAAGC*GCUAGUAA*UGAAUACGUUCCC

Length

29 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9D|1|BA|G|933
4V9D|1|BA|C|934
4V9D|1|BA|A|935
4V9D|1|BA|C|936
4V9D|1|BA|A|937
4V9D|1|BA|A|938
4V9D|1|BA|G|939
4V9D|1|BA|C|940
*
4V9D|1|BA|G|1343
4V9D|1|BA|C|1344
4V9D|1|BA|U|1345
4V9D|1|BA|A|1346
4V9D|1|BA|G|1347
4V9D|1|BA|U|1348
4V9D|1|BA|A|1349
4V9D|1|BA|A|1350
*
4V9D|1|BA|U|1372
4V9D|1|BA|G|1373
4V9D|1|BA|A|1374
4V9D|1|BA|A|1375
4V9D|1|BA|U|1376
4V9D|1|BA|A|1377
4V9D|1|BA|C|1378
4V9D|1|BA|G|1379
4V9D|1|BA|U|1380
4V9D|1|BA|U|1381
4V9D|1|BA|C|1382
4V9D|1|BA|C|1383
4V9D|1|BA|C|1384

Current chains

Chain BA

16S rRNA

Nearby chains

Chain BG

30S ribosomal protein S7

Chain BI

30S ribosomal protein S9

Chain BV

Transfer RNA; tRNA

Chain BX

messenger RNA