J3_4V9D_074

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCGACC*GAAA*UA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9D_074 not in the Motif Atlas

Homologous match to J3_5J7L_043

Geometric discrepancy: 0.1214

The information below is about J3_5J7L_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92705.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

1

Unit IDs

4V9D|1|DA|U|1344
4V9D|1|DA|C|1345
4V9D|1|DA|G|1346
4V9D|1|DA|A|1347
4V9D|1|DA|C|1348
4V9D|1|DA|C|1349
*
4V9D|1|DA|G|1382
4V9D|1|DA|A|1383
4V9D|1|DA|A|1384
4V9D|1|DA|A|1385
*
4V9D|1|DA|U|1402
4V9D|1|DA|A|1403

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DT

50S ribosomal protein L23