J3_4V9D_077

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUAAUCCU*AGGAGGUUAG*CAUAAG

Length

24 nucleotides

Bulged bases

4V9D|1|DA|U|2334, 4V9D|1|DA|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9D|1|DA|C|2295
4V9D|1|DA|U|2296
4V9D|1|DA|A|2297
4V9D|1|DA|A|2298
4V9D|1|DA|U|2299
4V9D|1|DA|C|2300
4V9D|1|DA|C|2301
4V9D|1|DA|U|2302
*
4V9D|1|DA|A|2314
4V9D|1|DA|G|2315
4V9D|1|DA|G|2316
4V9D|1|DA|A|2317
4V9D|1|DA|G|2318
4V9D|1|DA|G|2319
4V9D|1|DA|U|2320
4V9D|1|DA|U|2321
4V9D|1|DA|A|2322
4V9D|1|DA|G|2323
*
4V9D|1|DA|C|2332
4V9D|1|DA|A|2333
4V9D|1|DA|U|2334
4V9D|1|DA|A|2335
4V9D|1|DA|A|2336
4V9D|1|DA|G|2337

Current chains

Chain DA

23S rRNA

Nearby chains

Chain BV

Transfer RNA; tRNA

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DF

50S ribosomal protein L5

Chain DO

50S ribosomal protein L18

Chain DW

50S ribosomal protein L27