J3_4V9D_080

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

4V9D|1|AA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9D_080 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1661

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

4V9D|1|AA|C|990
4V9D|1|AA|U|991
4V9D|1|AA|U|992
4V9D|1|AA|G|993
4V9D|1|AA|A|994
4V9D|1|AA|C|995
4V9D|1|AA|A|996
4V9D|1|AA|U|997
*
4V9D|1|AA|A|1044
4V9D|1|AA|C|1045
4V9D|1|AA|A|1046
4V9D|1|AA|G|1047
*
4V9D|1|AA|C|1210
4V9D|1|AA|U|1211
4V9D|1|AA|U|1212
4V9D|1|AA|A|1213
4V9D|1|AA|C|1214
4V9D|1|AA|G|1215

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AN

30S ribosomal protein S14