J3_4V9F_006

3D structure

PDB id

4V9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UAAG*CGAGAAC*GUG

Length

14 nucleotides

Bulged bases

4V9F|1|0|G|1683, 4V9F|1|0|A|1684

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76012.1

Basepair signature

cWW-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V9F|1|0|U|1412
4V9F|1|0|A|1413
4V9F|1|0|A|1414
4V9F|1|0|G|1415
*
4V9F|1|0|C|1680
4V9F|1|0|G|1681
4V9F|1|0|A|1682
4V9F|1|0|G|1683
4V9F|1|0|A|1684
4V9F|1|0|A|1685
4V9F|1|0|C|1686
*
4V9F|1|0|G|1695
4V9F|1|0|U|1696
4V9F|1|0|G|1697

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L37e

Chain 2

50S ribosomal protein L39e

Chain P

50S ribosomal protein L19e