J3_4V9F_010
3D structure
- PDB id
- 4V9F (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.4 Å
Loop
- Sequence
- CCACAG*CGUUC*GUUCG
- Length
- 16 nucleotides
- Bulged bases
- 4V9F|1|9|C|12, 4V9F|1|9|C|113
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- 5S rRNA
- Broad Annotation
- No text annotation
- Motif group
- J3_89737.1
- Basepair signature
- cWW-F-cWW-tSS-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
4V9F|1|9|C|9
4V9F|1|9|C|10
4V9F|1|9|A|11
4V9F|1|9|C|12
4V9F|1|9|A|13
4V9F|1|9|G|14
*
4V9F|1|9|C|67
4V9F|1|9|G|68
4V9F|1|9|U|69
4V9F|1|9|U|70
4V9F|1|9|C|71
*
4V9F|1|9|G|110
4V9F|1|9|U|111
4V9F|1|9|U|112
4V9F|1|9|C|113
4V9F|1|9|G|114
Current chains
- Chain 9
- 5S Ribosomal RNA
Nearby chains
- Chain 0
- Large subunit ribosomal RNA; LSU rRNA
- Chain N
- 50S ribosomal protein L18P
- Chain Q
- 50S ribosomal protein L21e
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