J3_4V9F_016

3D structure

PDB id

4V9F (explore in PDB, NAKB, or RNA 3D Hub)

Description

The re-refined crystal structure of the Haloarcula marismortui large ribosomal subunit at 2.4 Angstrom resolution: more complete structure of the L7/L12 and L1 stalk, L5 and LX proteins

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CCGGUC*GGAAA*UG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_31965.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

5

Unit IDs

4V9F|1|0|C|1450
4V9F|1|0|C|1451
4V9F|1|0|G|1452
4V9F|1|0|G|1453
4V9F|1|0|U|1454
4V9F|1|0|C|1455
*
4V9F|1|0|G|1490
4V9F|1|0|G|1491
4V9F|1|0|A|1492
4V9F|1|0|A|1493
4V9F|1|0|A|1494
*
4V9F|1|0|U|1511
4V9F|1|0|G|1512

Current chains

Chain 0

23S Ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L39e

Chain S

50S ribosomal protein L23P