J3_4V9K_028
3D structure
- PDB id
- 4V9K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.5 Å
Loop
- Sequence
- CGAGCUA*UAG*CGAG
- Length
- 14 nucleotides
- Bulged bases
- 4V9K|1|DA|G|686, 4V9K|1|DA|G|792
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V9K_028 not in the Motif Atlas
- Homologous match to J3_7A0S_004
- Geometric discrepancy: 0.1334
- The information below is about J3_7A0S_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_64189.2
- Basepair signature
- cWW-tWH-cWW-tSW-F-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V9K|1|DA|C|683
4V9K|1|DA|G|684
4V9K|1|DA|A|685
4V9K|1|DA|G|686
4V9K|1|DA|C|687
4V9K|1|DA|U|688
4V9K|1|DA|A|689
*
4V9K|1|DA|U|773
4V9K|1|DA|A|774
4V9K|1|DA|G|775
*
4V9K|1|DA|C|791
4V9K|1|DA|G|792
4V9K|1|DA|A|793
4V9K|1|DA|G|794
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain D7
- 50S ribosomal protein L34
- Chain DD
- 50S ribosomal protein L2
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