J3_4V9K_050

3D structure

PDB id

4V9K (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome translocation intermediate GDPNP-I containing elongation factor EFG/GDPNP, mRNA, and tRNA bound in the pe*/E state.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAGCUA*UAGGA*UAACCGAG

Length

20 nucleotides

Bulged bases

4V9K|1|BA|A|789, 4V9K|1|BA|C|790, 4V9K|1|BA|G|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9K|1|BA|C|683
4V9K|1|BA|G|684
4V9K|1|BA|A|685
4V9K|1|BA|G|686
4V9K|1|BA|C|687
4V9K|1|BA|U|688
4V9K|1|BA|A|689
*
4V9K|1|BA|U|773
4V9K|1|BA|A|774
4V9K|1|BA|G|775
4V9K|1|BA|G|776
4V9K|1|BA|A|777
*
4V9K|1|BA|U|787
4V9K|1|BA|A|788
4V9K|1|BA|A|789
4V9K|1|BA|C|790
4V9K|1|BA|C|791
4V9K|1|BA|G|792
4V9K|1|BA|A|793
4V9K|1|BA|G|794

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B7

50S ribosomal protein L34

Chain BD

50S ribosomal protein L2

Chain BF

50S ribosomal protein L4

Chain BW

50S ribosomal protein L22