J3_4V9O_040

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9O_040 not in the Motif Atlas

Homologous match to J3_5J7L_039

Geometric discrepancy: 0.0515

The information below is about J3_5J7L_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.7

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4V9O|1|EA|C|698
4V9O|1|EA|A|699
4V9O|1|EA|G|700
*
4V9O|1|EA|C|732
4V9O|1|EA|G|733
4V9O|1|EA|A|734
4V9O|1|EA|A|735
4V9O|1|EA|C|736
*
4V9O|1|EA|G|760
4V9O|1|EA|A|761
4V9O|1|EA|U|762
4V9O|1|EA|G|763

Current chains

Chain EA

23S rRNA

Nearby chains

Chain EC

50S ribosomal protein L2