J3_4V9O_133

3D structure

PDB id

4V9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

4V9O|1|GA|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9O_133 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1216

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

4V9O|1|GA|G|297
4V9O|1|GA|G|298
4V9O|1|GA|A|299
4V9O|1|GA|A|300
4V9O|1|GA|G|301
*
4V9O|1|GA|C|316
4V9O|1|GA|G|317
4V9O|1|GA|C|318
4V9O|1|GA|G|319
4V9O|1|GA|A|320
4V9O|1|GA|U|321
4V9O|1|GA|A|322
4V9O|1|GA|C|323
4V9O|1|GA|A|324
4V9O|1|GA|G|325
*
4V9O|1|GA|C|337
4V9O|1|GA|G|338
4V9O|1|GA|U|339
4V9O|1|GA|A|340
4V9O|1|GA|C|341

Current chains

Chain GA

23S rRNA

Nearby chains

Chain GE

50S ribosomal protein L4

Chain GU

50S ribosomal protein L24