J3_4V9P_045

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

4V9P|1|EA|A|2518, 4V9P|1|EA|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9P_045 not in the Motif Atlas

Homologous match to J3_5J7L_046

Geometric discrepancy: 0.0622

The information below is about J3_5J7L_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.5

Basepair signature

cWW-tWH-cHW-F-cWW-tSS-F-cWW

Number of instances in this motif group

4

Unit IDs

4V9P|1|EA|C|2517
4V9P|1|EA|A|2518
4V9P|1|EA|U|2519
4V9P|1|EA|C|2520
*
4V9P|1|EA|G|2545
4V9P|1|EA|U|2546
4V9P|1|EA|A|2547
*
4V9P|1|EA|U|2561
4V9P|1|EA|U|2562
4V9P|1|EA|U|2563
4V9P|1|EA|A|2564
4V9P|1|EA|A|2565
4V9P|1|EA|A|2566
4V9P|1|EA|G|2567

Current chains

Chain EA

23S rRNA

Nearby chains

Chain ED

50S ribosomal protein L3

Chain EK

50S ribosomal protein L14