J3_4V9P_057

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

4V9P|1|GA|U|686, 4V9P|1|GA|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9P_057 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.0549

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

4V9P|1|GA|U|683
4V9P|1|GA|G|684
4V9P|1|GA|A|685
4V9P|1|GA|U|686
4V9P|1|GA|C|687
4V9P|1|GA|U|688
4V9P|1|GA|A|689
*
4V9P|1|GA|U|773
4V9P|1|GA|G|774
4V9P|1|GA|G|775
*
4V9P|1|GA|C|791
4V9P|1|GA|A|792
4V9P|1|GA|A|793
4V9P|1|GA|A|794

Current chains

Chain GA

23S rRNA

Nearby chains

Chain G2

50S ribosomal protein L34

Chain GC

50S ribosomal protein L2