J3_4V9P_069

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9P_069 not in the Motif Atlas

Homologous match to J3_5J7L_005

Geometric discrepancy: 0.0956

The information below is about J3_5J7L_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

4V9P|1|HA|U|943
4V9P|1|HA|G|944
4V9P|1|HA|G|945
4V9P|1|HA|A|946
*
4V9P|1|HA|U|1235
4V9P|1|HA|A|1236
4V9P|1|HA|C|1237
*
4V9P|1|HA|G|1337
4V9P|1|HA|G|1338
4V9P|1|HA|A|1339
4V9P|1|HA|A|1340

Current chains

Chain HA

16S rRNA

Nearby chains

Chain CA

Large subunit ribosomal RNA; LSU rRNA

Chain HG

30S ribosomal protein S7

Chain HI

30S ribosomal protein S9

Chain HM

30S ribosomal protein S13