J3_4V9P_103

3D structure

PDB id

4V9P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Control of ribosomal subunit rotation by elongation factor G

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGG*CUUG*CG

Length

9 nucleotides

Bulged bases

4V9P|1|DA|U|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9P_103 not in the Motif Atlas

Geometric match to J3_5J7L_002

Geometric discrepancy: 0.1088

The information below is about J3_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.5

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4V9P|1|DA|C|586
4V9P|1|DA|G|587
4V9P|1|DA|G|588
*
4V9P|1|DA|C|651
4V9P|1|DA|U|652
4V9P|1|DA|U|653
4V9P|1|DA|G|654
*
4V9P|1|DA|C|754
4V9P|1|DA|G|755

Current chains

Chain DA

16S rRNA

Nearby chains

Chain DH

30S ribosomal protein S8

Chain DL

30S ribosomal protein S12

Chain DO

30S ribosomal protein S15

Chain DQ

30S ribosomal protein S17