J3_4V9Q_028

3D structure

PDB id

4V9Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of Blasticidin S Bound to Thermus Thermophilus 70S Ribosome.

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9Q|1|DA|U|943
4V9Q|1|DA|G|944
4V9Q|1|DA|G|945
4V9Q|1|DA|A|946
*
4V9Q|1|DA|U|1235
4V9Q|1|DA|A|1236
4V9Q|1|DA|C|1237
*
4V9Q|1|DA|G|1337
4V9Q|1|DA|G|1338
4V9Q|1|DA|A|1339
4V9Q|1|DA|A|1340

Current chains

Chain DA

16S ribosomal RNA

Nearby chains

Chain DI

30S ribosomal protein S9

Chain DM

30S ribosomal protein S13

Chain DU

30S ribosomal protein Thx

Chain DV

Transfer RNA; tRNA

Chain DW

Transfer RNA; tRNA