J3_4V9R_032
3D structure
- PDB id
- 4V9R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CUCAG*CGGAGAG*UAGAAG
- Length
- 18 nucleotides
- Bulged bases
- 4V9R|1|DA|G|2334, 4V9R|1|DA|A|2336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V9R_032 not in the Motif Atlas
- Homologous match to J3_5J7L_071
- Geometric discrepancy: 0.5439
- The information below is about J3_5J7L_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_44961.1
- Basepair signature
- cWW-tSH-F-cWW-F-tHW-cWW-tWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
4V9R|1|DA|C|2295
4V9R|1|DA|U|2296
4V9R|1|DA|C|2297
4V9R|1|DA|A|2298
4V9R|1|DA|G|2299
*
4V9R|1|DA|C|2317
4V9R|1|DA|G|2318
4V9R|1|DA|G|2319
4V9R|1|DA|A|2320
4V9R|1|DA|G|2321
4V9R|1|DA|A|2322
4V9R|1|DA|G|2323
*
4V9R|1|DA|U|2332
4V9R|1|DA|A|2333
4V9R|1|DA|G|2334
4V9R|1|DA|A|2335
4V9R|1|DA|A|2336
4V9R|1|DA|G|2337
Current chains
- Chain DA
- 23S Ribosomal RNA
Nearby chains
- Chain CX
- Transfer RNA; tRNA
- Chain D0
- 50S Ribosomal Protein L27
- Chain DB
- 5S ribosomal RNA; 5S rRNA
- Chain DG
- 50S Ribosomal Protein L5
- Chain DS
- 50S Ribosomal Protein L18
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