J3_4V9R_049
3D structure
- PDB id
- 4V9R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of antibiotic DITYROMYCIN bound to 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GCC*GCCUAGUGAACC*GAUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 4V9R|1|BA|A|2400, 4V9R|1|BA|U|2402, 4V9R|1|BA|A|2438
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4V9R_049 not in the Motif Atlas
- Homologous match to J3_9DFE_015
- Geometric discrepancy: 0.0601
- The information below is about J3_9DFE_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.1
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
4V9R|1|BA|G|2294
4V9R|1|BA|C|2295
4V9R|1|BA|C|2296
*
4V9R|1|BA|G|2396
4V9R|1|BA|C|2397
4V9R|1|BA|C|2398
4V9R|1|BA|U|2399
4V9R|1|BA|A|2400
4V9R|1|BA|G|2401
4V9R|1|BA|U|2402
4V9R|1|BA|G|2403
4V9R|1|BA|A|2404
4V9R|1|BA|A|2405
4V9R|1|BA|C|2406
4V9R|1|BA|C|2407
*
4V9R|1|BA|G|2433
4V9R|1|BA|A|2434
4V9R|1|BA|U|2435
4V9R|1|BA|C|2436
4V9R|1|BA|A|2437
4V9R|1|BA|A|2438
4V9R|1|BA|C|2439
Current chains
- Chain BA
- 23S Ribosomal RNA
Nearby chains
- Chain B0
- 50S Ribosomal Protein L27
- Chain B1
- 50S Ribosomal Protein L28
- Chain B6
- 50S Ribosomal Protein L33
- Chain B8
- 50S Ribosomal Protein L35
- Chain BP
- 50S Ribosomal Protein L15
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