J3_4V9S_006

3D structure

PDB id

4V9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of antibiotic GE82832 bound to 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGAAC*GGUGCC*GGAGCC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4V9S_006 not in the Motif Atlas

Homologous match to J3_6CZR_022

Geometric discrepancy: 0.3211

The information below is about J3_6CZR_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9S|1|AA|G|1002
4V9S|1|AA|G|1003
4V9S|1|AA|A|1004
4V9S|1|AA|A|1005
4V9S|1|AA|C|1006
*
4V9S|1|AA|G|1023
4V9S|1|AA|G|1024
4V9S|1|AA|U|1025
4V9S|1|AA|G|1026
4V9S|1|AA|C|1027
4V9S|1|AA|C|1028
*
4V9S|1|AA|G|1033
4V9S|1|AA|G|1034
4V9S|1|AA|A|1035
4V9S|1|AA|G|1036
4V9S|1|AA|C|1037
4V9S|1|AA|C|1038

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains