3D structure

PDB id
4W23 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
CGACUG*UUCCG*CAAAGUCUUUGG
Length
23 nucleotides
Bulged bases
4W23|1|2|C|1138, 4W23|1|2|A|1150, 4W23|1|2|C|1153, 4W23|1|2|U|1155, 4W23|1|2|G|1157
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

4W23|1|2|C|1091
4W23|1|2|G|1092
4W23|1|2|A|1093
4W23|1|2|C|1094
4W23|1|2|U|1095
4W23|1|2|G|1096
*
4W23|1|2|U|1136
4W23|1|2|U|1137
4W23|1|2|C|1138
4W23|1|2|C|1139
4W23|1|2|G|1140
*
4W23|1|2|C|1147
4W23|1|2|A|1148
4W23|1|2|A|1149
4W23|1|2|A|1150
4W23|1|2|G|1151
4W23|1|2|U|1152
4W23|1|2|C|1153
4W23|1|2|U|1154
4W23|1|2|U|1155
4W23|1|2|U|1156
4W23|1|2|G|1157
4W23|1|2|G|1158

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain A
Ribosomal protein uS2
Chain C
Ribosomal protein uS5
Chain L
Ribosomal protein uS17
Chain N
Ribosomal protein uS15
Chain V
Ribosomal protein eS21
Chain W
Ribosomal protein uS8
Chain X
Ribosomal protein uS12
Chain a
Ribosomal protein eS26
Chain b
Ribosomal protein eS27

Coloring options:

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