J3_4W23_001
3D structure
- PDB id
- 4W23 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CGACUG*UUCCG*CAAAGUCUUUGG
- Length
- 23 nucleotides
- Bulged bases
- 4W23|1|2|C|1138, 4W23|1|2|A|1150, 4W23|1|2|C|1153, 4W23|1|2|U|1155, 4W23|1|2|G|1157
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4W23|1|2|C|1091
4W23|1|2|G|1092
4W23|1|2|A|1093
4W23|1|2|C|1094
4W23|1|2|U|1095
4W23|1|2|G|1096
*
4W23|1|2|U|1136
4W23|1|2|U|1137
4W23|1|2|C|1138
4W23|1|2|C|1139
4W23|1|2|G|1140
*
4W23|1|2|C|1147
4W23|1|2|A|1148
4W23|1|2|A|1149
4W23|1|2|A|1150
4W23|1|2|G|1151
4W23|1|2|U|1152
4W23|1|2|C|1153
4W23|1|2|U|1154
4W23|1|2|U|1155
4W23|1|2|U|1156
4W23|1|2|G|1157
4W23|1|2|G|1158
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain A
- Ribosomal protein uS2
- Chain C
- Ribosomal protein uS5
- Chain L
- Ribosomal protein uS17
- Chain N
- Ribosomal protein uS15
- Chain V
- Ribosomal protein eS21
- Chain W
- Ribosomal protein uS8
- Chain X
- Ribosomal protein uS12
- Chain a
- Ribosomal protein eS26
- Chain b
- Ribosomal protein eS27
Coloring options: