J3_4W23_002

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CCAGG*CCCAGUAA*UGAUUAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W23|1|2|C|1218
4W23|1|2|C|1219
4W23|1|2|A|1220
4W23|1|2|G|1221
4W23|1|2|G|1222
*
4W23|1|2|C|1644
4W23|1|2|C|1645
4W23|1|2|C|1646
4W23|1|2|A|1647
4W23|1|2|G|1648
4W23|1|2|U|1649
4W23|1|2|A|1650
4W23|1|2|A|1651
*
4W23|1|2|U|1673
4W23|1|2|G|1674
4W23|1|2|A|1675
4W23|1|2|U|1676
4W23|1|2|U|1677
4W23|1|2|A|1678
4W23|1|2|A|1679
4W23|1|2|G|1680

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Ribosomal protein uS7

Chain Q

Ribosomal protein uS9

Chain R

Ribosomal protein eS17

Chain c

Ribosomal protein eS28