J3_4W23_010

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UGGA*UUAAGAG*CAUUA

Length

16 nucleotides

Bulged bases

4W23|1|2|G|921

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W23|1|2|U|682
4W23|1|2|G|683
4W23|1|2|G|684
4W23|1|2|A|685
*
4W23|1|2|U|917
4W23|1|2|U|918
4W23|1|2|A|919
4W23|1|2|A|920
4W23|1|2|G|921
4W23|1|2|A|922
4W23|1|2|G|923
*
4W23|1|2|C|1019
4W23|1|2|A|1020
4W23|1|2|U|1021
4W23|1|2|U|1022
4W23|1|2|A|1023

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain H

Ribosomal protein eS7

Chain L

Ribosomal protein uS17

Chain N

Ribosomal protein uS15

Chain W

Ribosomal protein uS8

Chain X

Ribosomal protein uS12

Chain b

Ribosomal protein eS27