J3_4W23_014

3D structure

PDB id

4W23 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 80S mammalian ribosome bound to eEF2 (this entry contains the small ribosomal subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CACUGACUG*CAUUCGUGAUGGGGAUCG*CAUGAACGAG

Length

37 nucleotides

Bulged bases

4W23|1|2|U|1535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W23|1|2|C|1532
4W23|1|2|A|1533
4W23|1|2|C|1534
4W23|1|2|U|1535
4W23|1|2|G|1536
4W23|1|2|A|1537
4W23|1|2|C|1538
4W23|1|2|U|1539
4W23|1|2|G|1540
*
4W23|1|2|C|1593
4W23|1|2|A|1594
4W23|1|2|U|1595
4W23|1|2|U|1596
4W23|1|2|C|1597
4W23|1|2|G|1598
4W23|1|2|U|1599
4W23|1|2|G|1600
4W23|1|2|A|1601
4W23|1|2|U|1602
4W23|1|2|G|1603
4W23|1|2|G|1604
4W23|1|2|G|1605
4W23|1|2|G|1606
4W23|1|2|A|1607
4W23|1|2|U|1608
4W23|1|2|C|1609
4W23|1|2|G|1610
*
4W23|1|2|C|1629
4W23|1|2|A|1630
4W23|1|2|U|1631
4W23|1|2|G|1632
4W23|1|2|A|1633
4W23|1|2|A|1634
4W23|1|2|C|1635
4W23|1|2|G|1636
4W23|1|2|A|1637
4W23|1|2|G|1638

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain F

Ribosomal protein uS7

Chain Q

Ribosomal protein uS9

Chain S

Ribosomal protein uS13

Chain T

Ribosomal protein eS19

Chain Z

Ribosomal protein es25