J3_4W2E_002

3D structure

PDB id

4W2E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W2E_002 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0557

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4W2E|1|A|C|698
4W2E|1|A|A|699
4W2E|1|A|G|700
*
4W2E|1|A|C|732
4W2E|1|A|G|733
4W2E|1|A|A|734
4W2E|1|A|A|735
4W2E|1|A|C|736
*
4W2E|1|A|G|760
4W2E|1|A|A|761
4W2E|1|A|U|762
4W2E|1|A|G|763

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L2