3D structure

PDB id
4W2F (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites
Experimental method
X-RAY DIFFRACTION
Resolution
2.4 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCGA
Length
25 nucleotides
Bulged bases
4W2F|1|AA|A|975, 4W2F|1|AA|G|976, 4W2F|1|AA|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4W2F_004 not in the Motif Atlas
Homologous match to J3_4LFB_004
Geometric discrepancy: 0.0451
The information below is about J3_4LFB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4W2F|1|AA|U|955
4W2F|1|AA|U|956
4W2F|1|AA|U|957
4W2F|1|AA|A|958
4W2F|1|AA|A|959
4W2F|1|AA|U|960
4W2F|1|AA|U|961
4W2F|1|AA|C|962
*
4W2F|1|AA|G|973
4W2F|1|AA|A|974
4W2F|1|AA|A|975
4W2F|1|AA|G|976
4W2F|1|AA|A|977
4W2F|1|AA|A|978
4W2F|1|AA|C|979
4W2F|1|AA|C|980
4W2F|1|AA|U|981
4W2F|1|AA|U|982
4W2F|1|AA|A|983
4W2F|1|AA|C|984
*
4W2F|1|AA|G|1221
4W2F|1|AA|G|1222
4W2F|1|AA|C|1223
4W2F|1|AA|G|1224
4W2F|1|AA|A|1225

Current chains

Chain AA
16S Ribosomal RNA

Nearby chains

Chain AJ
30S Ribosomal Protein S10
Chain AM
30S Ribosomal Protein S13
Chain AN
30S Ribosomal Protein S14
Chain AS
30S Ribosomal Protein S19
Chain AW
Transfer RNA; tRNA

Coloring options:


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