J3_4W2F_006

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

GGAAC*GGUGCC*GGAGCC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W2F_006 not in the Motif Atlas

Homologous match to J3_6CZR_022

Geometric discrepancy: 0.3341

The information below is about J3_6CZR_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W2F|1|AA|G|1002
4W2F|1|AA|G|1003
4W2F|1|AA|A|1004
4W2F|1|AA|A|1005
4W2F|1|AA|C|1006
*
4W2F|1|AA|G|1023
4W2F|1|AA|G|1024
4W2F|1|AA|U|1025
4W2F|1|AA|G|1026
4W2F|1|AA|C|1027
4W2F|1|AA|C|1028
*
4W2F|1|AA|G|1033
4W2F|1|AA|G|1034
4W2F|1|AA|A|1035
4W2F|1|AA|G|1036
4W2F|1|AA|C|1037
4W2F|1|AA|C|1038

Current chains

Chain AA

16S Ribosomal RNA

Nearby chains