J3_4W2F_014

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

4W2F|1|BA|A|1655

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W2F_014 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.0358

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

4W2F|1|BA|C|1352
4W2F|1|BA|A|1353
4W2F|1|BA|A|1354
4W2F|1|BA|G|1355
*
4W2F|1|BA|C|1651
4W2F|1|BA|G|1652
4W2F|1|BA|C|1653
4W2F|1|BA|A|1654
4W2F|1|BA|A|1655
4W2F|1|BA|A|1656
4W2F|1|BA|C|1657
*
4W2F|1|BA|G|1666
4W2F|1|BA|U|1667
4W2F|1|BA|G|1668

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B7

50S Ribosomal Protein L34