J3_4W2F_072

3D structure

PDB id

4W2F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

CUCAGG*CCGGAGAG*UAGAAG

Length

20 nucleotides

Bulged bases

4W2F|1|DA|G|2334, 4W2F|1|DA|A|2336

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4W2F|1|DA|C|2295
4W2F|1|DA|U|2296
4W2F|1|DA|C|2297
4W2F|1|DA|A|2298
4W2F|1|DA|G|2299
4W2F|1|DA|G|2300
*
4W2F|1|DA|C|2316
4W2F|1|DA|C|2317
4W2F|1|DA|G|2318
4W2F|1|DA|G|2319
4W2F|1|DA|A|2320
4W2F|1|DA|G|2321
4W2F|1|DA|A|2322
4W2F|1|DA|G|2323
*
4W2F|1|DA|U|2332
4W2F|1|DA|A|2333
4W2F|1|DA|G|2334
4W2F|1|DA|A|2335
4W2F|1|DA|A|2336
4W2F|1|DA|G|2337

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CX

Transfer RNA; tRNA

Chain D0

50S Ribosomal Protein L27

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DG

50S Ribosomal Protein L5

Chain DS

50S Ribosomal Protein L18