J3_4W2G_004
3D structure
- PDB id
- 4W2G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.55 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCGA
- Length
- 25 nucleotides
- Bulged bases
- 4W2G|1|AA|A|975, 4W2G|1|AA|G|976, 4W2G|1|AA|A|978
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4W2G_004 not in the Motif Atlas
- Homologous match to J3_4LFB_004
- Geometric discrepancy: 0.045
- The information below is about J3_4LFB_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.4
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4W2G|1|AA|U|955
4W2G|1|AA|U|956
4W2G|1|AA|U|957
4W2G|1|AA|A|958
4W2G|1|AA|A|959
4W2G|1|AA|U|960
4W2G|1|AA|U|961
4W2G|1|AA|C|962
*
4W2G|1|AA|G|973
4W2G|1|AA|A|974
4W2G|1|AA|A|975
4W2G|1|AA|G|976
4W2G|1|AA|A|977
4W2G|1|AA|A|978
4W2G|1|AA|C|979
4W2G|1|AA|C|980
4W2G|1|AA|U|981
4W2G|1|AA|U|982
4W2G|1|AA|A|983
4W2G|1|AA|C|984
*
4W2G|1|AA|G|1221
4W2G|1|AA|G|1222
4W2G|1|AA|C|1223
4W2G|1|AA|G|1224
4W2G|1|AA|A|1225
Current chains
- Chain AA
- 16S Ribosomal RNA
Nearby chains
- Chain AJ
- 30S Ribosomal Protein S10
- Chain AM
- 30S Ribosomal Protein S13
- Chain AN
- 30S Ribosomal Protein S14
- Chain AS
- 30S Ribosomal Protein S19
- Chain AW
- Transfer RNA; tRNA
Coloring options: