3D structure

PDB id
4W2G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites
Experimental method
X-RAY DIFFRACTION
Resolution
2.55 Å

Loop

Sequence
GCC*GCCUAGUGAACC*GAUCAAC
Length
22 nucleotides
Bulged bases
4W2G|1|BA|A|2400, 4W2G|1|BA|U|2402, 4W2G|1|BA|A|2438
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4W2G_049 not in the Motif Atlas
Homologous match to J3_9DFE_015
Geometric discrepancy: 0.0584
The information below is about J3_9DFE_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_20992.1
Basepair signature
cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F
Number of instances in this motif group
5

Unit IDs

4W2G|1|BA|G|2294
4W2G|1|BA|C|2295
4W2G|1|BA|C|2296
*
4W2G|1|BA|G|2396
4W2G|1|BA|C|2397
4W2G|1|BA|C|2398
4W2G|1|BA|U|2399
4W2G|1|BA|A|2400
4W2G|1|BA|G|2401
4W2G|1|BA|U|2402
4W2G|1|BA|G|2403
4W2G|1|BA|A|2404
4W2G|1|BA|A|2405
4W2G|1|BA|C|2406
4W2G|1|BA|C|2407
*
4W2G|1|BA|G|2433
4W2G|1|BA|A|2434
4W2G|1|BA|U|2435
4W2G|1|BA|C|2436
4W2G|1|BA|A|2437
4W2G|1|BA|A|2438
4W2G|1|BA|C|2439

Current chains

Chain BA
23S Ribosomal RNA

Nearby chains

Chain AY
Transfer RNA; tRNA
Chain B0
50S Ribosomal Protein L27
Chain B1
50S Ribosomal Protein L28
Chain B6
50S Ribosomal Protein L33
Chain B8
50S Ribosomal Protein L35
Chain BP
50S Ribosomal Protein L15

Coloring options:


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