J3_4W2H_031

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAAG*CGCAAAC*GUG

Length

14 nucleotides

Bulged bases

4W2H|1|DA|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W2H_031 not in the Motif Atlas

Homologous match to J3_7RQB_008

Geometric discrepancy: 0.0498

The information below is about J3_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_16623.1

Basepair signature

cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

4W2H|1|DA|C|1306
4W2H|1|DA|A|1307
4W2H|1|DA|A|1308
4W2H|1|DA|G|1309
*
4W2H|1|DA|C|1605
4W2H|1|DA|G|1606
4W2H|1|DA|C|1607
4W2H|1|DA|A|1608
4W2H|1|DA|A|1609
4W2H|1|DA|A|1610
4W2H|1|DA|C|1611
*
4W2H|1|DA|G|1620
4W2H|1|DA|U|1621
4W2H|1|DA|G|1622

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain D7

50S Ribosomal Protein L34