J3_4W2H_046

3D structure

PDB id

4W2H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

AC*GAUAAGC*GAUGU

Length

14 nucleotides

Bulged bases

4W2H|1|BA|U|71, 4W2H|1|BA|A|73

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W2H_046 not in the Motif Atlas

Homologous match to J3_9DFE_004

Geometric discrepancy: 0.0451

The information below is about J3_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_35667.2

Basepair signature

cWW-cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

7

Unit IDs

4W2H|1|BA|A|55
4W2H|1|BA|C|56
*
4W2H|1|BA|G|69
4W2H|1|BA|A|70
4W2H|1|BA|U|71
4W2H|1|BA|A|72
4W2H|1|BA|A|73
4W2H|1|BA|G|74
4W2H|1|BA|C|75
*
4W2H|1|BA|G|108
4W2H|1|BA|A|109
4W2H|1|BA|U|110
4W2H|1|BA|G|111
4W2H|1|BA|U|112

Current chains

Chain BA

23S Ribosomal RNA

Nearby chains

Chain B2

50S Ribosomal Protein L29

Chain B7

50S Ribosomal Protein L34

Chain BX

50S Ribosomal Protein L23