J3_4W2I_008
3D structure
- PDB id
- 4W2I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CGC*GGACUGC*GAGGAAGGAG
- Length
- 20 nucleotides
- Bulged bases
- 4W2I|1|AA|A|1183
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_4W2I_008 not in the Motif Atlas
- Homologous match to J3_5J7L_054
- Geometric discrepancy: 0.1146
- The information below is about J3_5J7L_054
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.2
- Basepair signature
- cWW-F-cHW-cWW-tWH-cWW-F-tSW-tWS-cSH-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
4W2I|1|AA|C|1116
4W2I|1|AA|G|1117
4W2I|1|AA|C|1118
*
4W2I|1|AA|G|1155
4W2I|1|AA|G|1156
4W2I|1|AA|A|1157
4W2I|1|AA|C|1158
4W2I|1|AA|U|1159
4W2I|1|AA|G|1160
4W2I|1|AA|C|1161
*
4W2I|1|AA|G|1175
4W2I|1|AA|A|1176
4W2I|1|AA|G|1177
4W2I|1|AA|G|1178
4W2I|1|AA|A|1179
4W2I|1|AA|A|1180
4W2I|1|AA|G|1181
4W2I|1|AA|G|1182
4W2I|1|AA|A|1183
4W2I|1|AA|G|1184
Current chains
- Chain AA
- 16S Ribosomal RNA
Nearby chains
- Chain AB
- 30S Ribosomal Protein S2
- Chain AG
- 30S Ribosomal Protein S7
- Chain AI
- 30S Ribosomal Protein S9
- Chain AJ
- 30S Ribosomal Protein S10
- Chain AN
- 30S Ribosomal Protein S14
Coloring options: