J3_4W2I_028

3D structure

PDB id

4W2I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W2I_028 not in the Motif Atlas

Homologous match to J3_7RQB_005

Geometric discrepancy: 0.0553

The information below is about J3_7RQB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.4

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

4W2I|1|DA|C|698
4W2I|1|DA|A|699
4W2I|1|DA|G|700
*
4W2I|1|DA|C|732
4W2I|1|DA|G|733
4W2I|1|DA|A|734
4W2I|1|DA|A|735
4W2I|1|DA|C|736
*
4W2I|1|DA|G|760
4W2I|1|DA|A|761
4W2I|1|DA|U|762
4W2I|1|DA|G|763

Current chains

Chain DA

23S Ribosomal RNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DD

50S Ribosomal Protein L2