3D structure

PDB id
4W4G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
UUUAAUUC*GAAGAACCUUAC*GGCGA
Length
25 nucleotides
Bulged bases
4W4G|1|QA|A|975, 4W4G|1|QA|G|976, 4W4G|1|QA|A|978
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4W4G_004 not in the Motif Atlas
Homologous match to J3_4LFB_004
Geometric discrepancy: 0.1286
The information below is about J3_4LFB_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_83516.4
Basepair signature
cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4W4G|1|QA|U|955
4W4G|1|QA|U|956
4W4G|1|QA|U|957
4W4G|1|QA|A|958
4W4G|1|QA|A|959
4W4G|1|QA|U|960
4W4G|1|QA|U|961
4W4G|1|QA|C|962
*
4W4G|1|QA|G|973
4W4G|1|QA|A|974
4W4G|1|QA|A|975
4W4G|1|QA|G|976
4W4G|1|QA|A|977
4W4G|1|QA|A|978
4W4G|1|QA|C|979
4W4G|1|QA|C|980
4W4G|1|QA|U|981
4W4G|1|QA|U|982
4W4G|1|QA|A|983
4W4G|1|QA|C|984
*
4W4G|1|QA|G|1221
4W4G|1|QA|G|1222
4W4G|1|QA|C|1223
4W4G|1|QA|G|1224
4W4G|1|QA|A|1225

Current chains

Chain QA
16S rRNA

Nearby chains

Chain QJ
30S ribosomal protein S10
Chain QM
30S ribosomal protein S13
Chain QN
30S ribosomal protein S14
Chain QS
30S ribosomal protein S19
Chain QY
Host inhibition of growth B

Coloring options:


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