3D structure

PDB id
4W4G (explore in PDB, NAKB, or RNA 3D Hub)
Description
Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
CAAG*CGCAAAC*GUG
Length
14 nucleotides
Bulged bases
4W4G|1|RA|A|1609
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_4W4G_014 not in the Motif Atlas
Homologous match to J3_7RQB_008
Geometric discrepancy: 0.0609
The information below is about J3_7RQB_008
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_16623.1
Basepair signature
cWW-tSH-tWW-tHH-F-tHW-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

4W4G|1|RA|C|1306
4W4G|1|RA|A|1307
4W4G|1|RA|A|1308
4W4G|1|RA|G|1309
*
4W4G|1|RA|C|1605
4W4G|1|RA|G|1606
4W4G|1|RA|C|1607
4W4G|1|RA|A|1608
4W4G|1|RA|A|1609
4W4G|1|RA|A|1610
4W4G|1|RA|C|1611
*
4W4G|1|RA|G|1620
4W4G|1|RA|U|1621
4W4G|1|RA|G|1622

Current chains

Chain RA
23S rRNA

Nearby chains

Chain R7
50S ribosomal protein L34

Coloring options:


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