J3_4W4G_057

3D structure

PDB id

4W4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Postcleavage state of 70S bound to HigB toxin and AAA (lysine) codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGG*CUAG*CG

Length

9 nucleotides

Bulged bases

4W4G|1|XA|A|653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_4W4G_057 not in the Motif Atlas

Geometric match to J3_4LFB_011

Geometric discrepancy: 0.12

The information below is about J3_4LFB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_56052.5

Basepair signature

cWW-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

4W4G|1|XA|C|586
4W4G|1|XA|G|587
4W4G|1|XA|G|588
*
4W4G|1|XA|C|651
4W4G|1|XA|U|652
4W4G|1|XA|A|653
4W4G|1|XA|G|654
*
4W4G|1|XA|C|754
4W4G|1|XA|G|755

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XH

30S ribosomal protein S8

Chain XL

30S ribosomal protein S12

Chain XO

30S ribosomal protein S15

Chain XQ

30S ribosomal protein S17