J3_4W90_002

3D structure

PDB id

4W90 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Bacillus subtilis cyclic-di-AMP riboswitch ydaO

Experimental method

X-RAY DIFFRACTION

Resolution

3.12 Å

Loop

Sequence

UUAAU*AG*UAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_80578.1

Basepair signature

cWW-F-F-F-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

4W90|1|C|U|7
4W90|1|C|U|8
4W90|1|C|A|9
4W90|1|C|A|10
4W90|1|C|U|11
*
4W90|1|C|A|22
4W90|1|C|G|23
*
4W90|1|C|U|111
4W90|1|C|A|112
4W90|1|C|A|113

Current chains

Chain C

riboswitch a pseudo-dimeric RNA

Nearby chains